About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10695558_10696310_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10695558 - 10696310
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
GTCTTCCCATTT
Flanking Amino Acid:
RLCNNYWSRESTGVQAEDVD
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.9
39.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
77
0.61
0.8
74
30.7
Minor 5ss
31.8
-2.1
3.1
40.8
45
Minor BPS
43.3
-0.4
2
61.07
43.1

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180