About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10696832_10696903_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10696832 - 10696903
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTGCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAC
U12 Branch Point Sequence:
CGTCCCTGACCT
Flanking Amino Acid:
TRKKVIATFQSIVLYEWLPT
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
77.9
31.9
Major BPS
59.8
0.24
1.3
63.1
44.5
Major PPT
61.8
0.27
0.9
53.1
36.7
Minor 5ss
30.5
-2.2
3.5
41.8
45.1
Minor BPS
53
0.17
1.8
71.32
45

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180