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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10697071_10697749_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10697071 - 10697749
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
GTGGCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCTGATGT
Flanking Amino Acid:
TGQGGPRGIYDLGNAWGNEN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
37.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.1
0.52
1
65.7
40.9
Minor 5ss
30
-2.3
3.5
41.5
45.4
Minor BPS
46.5
-0.1
2
63.57
46.9

Associated Gene:

Gene:
DUOX2
Ensembl Gene ID:
ENSAPLG00000005182
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005395
10683952 - 10702131
18180