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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10707702_10709035_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10707702 - 10709035
Intron Length:
1334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTA
5'SS Class:
major
3'SS Sequence:
TATTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GAGTATTTCATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
70.8
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.2
0.84
0.7
81.7
29.9
Minor 5ss
41.5
-0.9
3.1
56.7
47.4
Minor BPS
46
-0.3
1.9
52.82
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005516
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005703
10707543 - 10712778
5236