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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10709341_10709462_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10709341 - 10709462
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGCGTGAC
5'SS Class:
major
3'SS Sequence:
TCTCTCCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGTTCCTCCATG
Flanking Amino Acid:
LIIPGIRGRARLYWIFRVLL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
63.3
37.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79
0.65
0.8
73.8
30.1
Minor 5ss
26.9
-2.6
3.2
34.4
42
Minor BPS
52.6
-0
2.1
64.4
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005516
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005703
10707543 - 10712778
5236