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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10711632_10711914_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10711632 - 10711914
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
CTCTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CACATCTTATCC
Flanking Amino Acid:
ISGHYASATLWVAFCTWLIS
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.2
36.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
41.2
-1
3
53.8
44.4
Minor BPS
49.6
-0
1.7
55.43
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005516
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005703
10707543 - 10712778
5236