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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10712130_10712578_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10712130 - 10712578
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CATTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
GTTTACAGGATT
Flanking Amino Acid:
GGSFWLTLVIGLLCFVAGIA
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
80.9
0.69
0.9
77.2
36.7
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
47.3
-0.1
1.9
71
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005516
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005703
10707543 - 10712778
5236