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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10719362_10719957_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10719362 - 10719957
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
CCTGTCCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTAGAT
U12 Branch Point Sequence:
CTGTCCTTACAG
Flanking Amino Acid:
MGLFIGAVVLTMQFTRDWES
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1
65.5
40.2
Major BPS
49.5
-0
1.3
48.6
45.1
Major PPT
79.3
0.66
0.8
72.1
32.7
Minor 5ss
32.8
-2
2.7
40.5
39
Minor BPS
55.2
0.02
1.9
60.18
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005531
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005709
10715860 - 10720782
4923