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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10743051_10743209_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10743051 - 10743209
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAC
U12 Branch Point Sequence:
TGTGAGTGCACA
Flanking Amino Acid:
ILMNDYPKFKYAVLFLLGLF
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
52.6
0.07
1.1
60.7
37.6
Major PPT
89.5
0.89
0.6
84.5
23.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
37.8
-0.9
2.5
53.78
44.3

Associated Gene:

Gene:
SEC11A
Ensembl Gene ID:
ENSAPLG00000005536
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005741
10743000 - 10751019
8020