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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10743268_10744826_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10743268 - 10744826
Intron Length:
1559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTACTTATTT
Flanking Amino Acid:
EKKDVVGRARGFVPYIGIVT
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.7
0.71
0.8
77
31.6
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
63.4
0.5
1.8
80.67
41.5

Associated Gene:

Gene:
SEC11A
Ensembl Gene ID:
ENSAPLG00000005536
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005741
10743000 - 10751019
8020