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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10744947_10748648_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10744947 - 10748648
Intron Length:
3702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
TTATCTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTCTCTGACT
Flanking Amino Acid:
IVHRVLKIHEKQNGDIKFLT
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
67
38.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
74.2
0.54
1
69.9
41.2
Minor 5ss
42.3
-0.9
2.7
51
39.6
Minor BPS
72.7
0.8
1.6
92.05
30.2

Associated Gene:

Gene:
SEC11A
Ensembl Gene ID:
ENSAPLG00000005536
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005741
10743000 - 10751019
8020