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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10748799_10750720_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10748799 - 10750720
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCCG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATTGCTCAATT
Flanking Amino Acid:
GSESPIVVVLSGSMEPAFHR
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
51.4
45.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
29.4
-2.4
3.4
39.4
46
Minor BPS
61.6
0.44
2
81.52
40.2

Associated Gene:

Gene:
SEC11A
Ensembl Gene ID:
ENSAPLG00000005536
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005741
10743000 - 10751019
8020