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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10758374_10759572_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10758374 - 10759572
Intron Length:
1199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTTACTAAAAG
Flanking Amino Acid:
VSHMKRSHGRSVKRYPCRQC
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
76.1
39.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
82.1
0.72
0.7
77.8
31
Minor 5ss
34.5
-1.8
3.2
41.9
44.5
Minor BPS
50.6
-0.1
2
62.73
44.4

Associated Gene:

Gene:
ZNF592
Ensembl Gene ID:
ENSAPLG00000005632
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005836
10752587 - 10794487
41901