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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10764835_10769192_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10764835 - 10769192
Intron Length:
4358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGCC
5'SS Class:
major
3'SS Sequence:
ATGTGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GCAGCTTTAACT
Flanking Amino Acid:
CLHYSRKVGFRCIHCGNVFM
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
36.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
68.7
0.42
1
59
42.4
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
66.1
0.58
1.4
73.14
43.8

Associated Gene:

Gene:
ZNF592
Ensembl Gene ID:
ENSAPLG00000005632
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005836
10752587 - 10794487
41901