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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10769372_10788092_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10769372 - 10788092
Intron Length:
18721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AATAACATAACC
Flanking Amino Acid:
QRTSEDNERLTCQVCQMMLP
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
82.6
0.73
0.8
82.7
27.5
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
51.9
0.04
1.8
65.65
38.7

Associated Gene:

Gene:
ZNF592
Ensembl Gene ID:
ENSAPLG00000005632
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005836
10752587 - 10794487
41901