About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10790432_10794372_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
5UTR

Intron Coordinates:
10790432 - 10794372

Intron Length:
3941

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTTTGTACA

5'SS Class:
major

3'SS Sequence:
CTTTTAATTGTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TACACCTTAACA

Flanking Amino Acid:
5UTR

Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.7
0.63
1.1
74.5
35.3

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
79.8
0.67
0.8
74.9
33.5

Minor 5ss
38.5
-1.3
2.3
44.3
43

Minor BPS
76.7
0.83
1.3
77.62
38.8

Associated Gene:

Gene:
ZNF592

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10752587 - 10794487
41901