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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10798822_10801136_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10798822 - 10801136
Intron Length:
2315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAGGAAAC
5'SS Class:
major
3'SS Sequence:
CTTGTCTGTAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTAACATCT
Flanking Amino Acid:
PLEKCLKSGGFGPAAITLFH
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
60.8
38
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
55.5
0.13
1.7
64.3
41.5
Minor 5ss
34.9
-1.7
3.3
48.8
41.7
Minor BPS
45.2
-0.2
2.2
74.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020089
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026908
10797703 - 10801219
3517