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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10811174_10812705_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10811174 - 10812705
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGGC
5'SS Class:
major
3'SS Sequence:
TCTCCCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCGAAT
U12 Branch Point Sequence:
GTCTCCGAATCA
Flanking Amino Acid:
FQLCGLQKIQVDVVLQLDLH
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
59.8
39
Major BPS
57
0.17
1.4
65.8
39.5
Major PPT
78
0.63
0.7
69.8
31
Minor 5ss
27.5
-2.6
3.8
40.6
46
Minor BPS
43.8
-0.4
2.4
59.42
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048267
10810341 - 10834833
24493
ENSAPLT00000046558
10810341 - 10835504
25164
ENSAPLT00000005904
10810847 - 10834833
23987