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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10812832_10818547_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10812832 - 10818547
Intron Length:
5716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
CTTTCTGACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATTTCCTTACAT
Flanking Amino Acid:
DAHLMLRQPTEVDDVANLEE
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
65.6
40.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.8
0.51
0.9
65.5
40.1
Minor 5ss
36.2
-1.6
3.1
54.6
42.6
Minor BPS
71.4
0.75
1.7
87.9
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048267
10810341 - 10834833
24493
ENSAPLT00000046558
10810341 - 10835504
25164
ENSAPLT00000005904
10810847 - 10834833
23987