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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10820007_10823571_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10820007 - 10823571
Intron Length:
3565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
TCTCCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTCCTCTTACA
Flanking Amino Acid:
NLILLDTCRKWYNLECALSQ
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
57.5
42.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.6
0.8
0.7
79.7
25.9
Minor 5ss
35.8
-1.6
3.5
46.4
44.5
Minor BPS
49.2
-0
2
65.55
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048267
10810341 - 10834833
24493
ENSAPLT00000046558
10810341 - 10835504
25164
ENSAPLT00000005904
10810847 - 10834833
23987