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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10823750_10828136_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10823750 - 10828136
Intron Length:
4387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TGCACCGTGACT
Flanking Amino Acid:
FLQLLGKGVYAIFYYAGHGY
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
83.9
0.76
0.8
75.9
38
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
52.3
0.15
2.1
72.75
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048267
10810341 - 10834833
24493
ENSAPLT00000046558
10810341 - 10835504
25164
ENSAPLT00000005904
10810847 - 10834833
23987