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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10828341_10829159_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10828341 - 10829159
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTCTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AGCTTTTTCACT
Flanking Amino Acid:
VGSCRSEKFFATGKIALLVG
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.9
0.45
1
70.2
41.3
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
54.8
0.23
1.7
69.96
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005904
10810847 - 10834833
23987
ENSAPLT00000048267
10810341 - 10834833
24493
ENSAPLT00000046558
10810341 - 10835504
25164