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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10833672_10834013_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10833672 - 10834013
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
GTTTTCCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CGCTGCCCACCG
Flanking Amino Acid:
LQYQWFCQRQSVCCQIPGAT
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
80.9
0.7
0.7
78.7
30.2
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
35
-1.2
2.2
36.5
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048267
10810341 - 10834833
24493
ENSAPLT00000046558
10810341 - 10835504
25164
ENSAPLT00000005904
10810847 - 10834833
23987