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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10834133_10834565_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10834133 - 10834565
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGCAA
U12 Branch Point Sequence:
CCTGTTGCAAGC
Flanking Amino Acid:
GRGAGRAMQPAIVITEQPVS
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
49.2
-0
1.5
63.4
44.3
Major PPT
80.8
0.69
0.7
77.4
24.6
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
35.7
-1.1
2.2
40.33
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048267
10810341 - 10834833
24493
ENSAPLT00000046558
10810341 - 10835504
25164
ENSAPLT00000005904
10810847 - 10834833
23987