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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10834664_10834823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10834664 - 10834823
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
GCCTGCCCACCT
Flanking Amino Acid:
RRLLGAHHAGRCSAGPGAAC
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
74.2
0.55
0.7
68.5
25.1
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
38.1
-0.8
2.3
53.17
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046558
10810341 - 10835504
25164