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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10834913_10835471_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10834913 - 10835471
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
CGCCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGAGCAC
U12 Branch Point Sequence:
CCCCCGGTGAGC
Flanking Amino Acid:
SPRAVALGTEGPREPGRLGE
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
40.5
-0.6
1.3
40.8
39.7
Major PPT
70.8
0.47
0.8
64.6
30.8
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
33.8
-1.2
2.5
37.96
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005706
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046558
10810341 - 10835504
25164