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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10851043_10854218_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10851043 - 10854218
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGAATCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GCTTCTTGAATC
Flanking Amino Acid:
SSRFSLSSLGRSTFCAIISQ
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
75.9
0.58
1
66.2
44.8
Minor 5ss
34.9
-1.7
3.3
47.7
47.7
Minor BPS
63.5
0.4
1.4
67.66
38.3

Associated Gene:

Gene:
ALPK3
Ensembl Gene ID:
ENSAPLG00000028618
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022154
10841273 - 10874996
33724