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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10871816_10871922_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10871816 - 10871922
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTCCCTCCACC
Flanking Amino Acid:
SGFILREEIEVGEEIEMTPM
Intron Amino Acid Position:
1293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.6
0.53
0.9
66.8
34.1
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
52.7
0.07
2
68.24
43.3

Associated Gene:

Gene:
ALPK3
Ensembl Gene ID:
ENSAPLG00000028618
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031096
10841273 - 10874996
33724
ENSAPLT00000022154
10841273 - 10874996
33724