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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10873040_10873239_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10873040 - 10873239
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGG
5'SS Class:
major
3'SS Sequence:
CCTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGGCAG
U12 Branch Point Sequence:
CCTCCCTTTCCT
Flanking Amino Acid:
NGNILVTDMEGVGWKMTNVR
Intron Amino Acid Position:
1487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
61.1
43.7
Major BPS
38.5
-0.7
1.7
42.8
49.4
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
28
-2.5
3.5
37.8
47.1
Minor BPS
42.2
-0.5
3.6
69.35
47.2

Associated Gene:

Gene:
ALPK3
Ensembl Gene ID:
ENSAPLG00000028618
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031096
10841273 - 10874996
33724
ENSAPLT00000022154
10841273 - 10874996
33724