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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10877448_10877627_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10877448 - 10877627
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCCCG
5'SS Class:
weak_major
3'SS Sequence:
GCGCTCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
GCGCTCTTCCCA
Flanking Amino Acid:
MVNIKDLSFQMICSYVLMPV
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.2
49.8
46.6
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
70.1
0.45
0.9
60.9
40.2
Minor 5ss
49.8
-0
2.5
66.1
45
Minor BPS
35.5
-1.1
3.4
48.37
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005884
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041791
10875431 - 10884089
8659
ENSAPLT00000018784
10875716 - 10880656
4941
ENSAPLT00000006146
10875209 - 10884089
8881