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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10879668_10880024_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10879668 - 10880024
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
TGTCTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAG
U12 Branch Point Sequence:
CCTTTGGGGACA
Flanking Amino Acid:
LGAMQWLILKISWLLQFSMG
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67
44.2
Major BPS
47.3
-0.1
1.7
57.1
49.4
Major PPT
74.2
0.54
0.9
65.4
41.1
Minor 5ss
32
-2.1
3.6
47.9
47.8
Minor BPS
37.6
-0.9
2.5
49.52
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005884
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006146
10875209 - 10884089
8881