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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10891403_10894258_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10891403 - 10894258
Intron Length:
2856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTTTT
5'SS Class:
major
3'SS Sequence:
GTCTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTGTCCCCACCG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.2
37.4
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
79.5
0.66
0.9
72.9
37.4
Minor 5ss
39.8
-1.1
3.3
57.9
46.7
Minor BPS
44
-0.5
2.2
52.05
48.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006184
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006406
10891265 - 10909976
18712