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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10916677_10925880_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10916677 - 10925880
Intron Length:
9204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAG
5'SS Class:
major
3'SS Sequence:
TTCATTCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTCATT
Flanking Amino Acid:
APAPLPADSRGRNKTSSAVS
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.9
43.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.6
0.67
0.9
77.7
35.6
Minor 5ss
29.5
-2.4
3.3
37.6
47.1
Minor BPS
60
0.39
2
81.98
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025363
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032410
10916021 - 10926317
10297