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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1091708_1091925_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1091708 - 1091925
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTAAAACCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTTTGTTTAAAA
Flanking Amino Acid:
VKFGWVKGVLVRCMLNIWGV
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
72.9
31.2
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
58.5
0.19
1
49.4
42.9
Minor 5ss
28.5
-2.5
2.8
31.7
36.2
Minor BPS
61
0.34
1.9
73.23
38.5

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591