Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1092002_1096545_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1092002 - 1096545

Intron Length:

4544

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTATC

5'SS Class:

strong_major

3'SS Sequence:

TTATTACTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

ATCTTCTTATTA

Flanking Amino Acid:

LSWIVGQAGIGLGVIIILLA

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

79.7

33.4

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

73.9

0.54

69.9

40.4

Minor 5ss

46.5

-0.4

2.5

59.7

39.2

Minor BPS

61.8

0.37

1.6

68.76

38.4

Associated Gene:

Gene:

SLC12A1

Ensembl Gene ID:

ENSAPLG00000007672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008056

1085515 - 1134105

48591