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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10945961_10946080_R

Intron Information:

Intron Rank:
137074
Intron Class:
major
Intron Phase:
Intron Coordinates:
10945961 - 10946080
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTGCA
5'SS Class:
major
3'SS Sequence:
TGCCGTTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TAATTCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
33.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.3
0.57
0.9
68.1
37.6
Minor 5ss
33.8
-1.9
3
37.8
42.2
Minor BPS
68.6
0.66
1.6
81.69
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021242
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028965
10944630 - 10946388
1759