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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10950218_10951142_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10950218 - 10951142
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
34.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
1
76.4
36.7
Minor 5ss
38.5
-1.3
3.2
52
45.2
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024532
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044783
10949683 - 10953776
4094