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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10951292_10951805_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10951292 - 10951805
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTATTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
GAAACCTTGACA
Flanking Amino Acid:
MAMLNRTEVSE
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
80.2
30.6
Major BPS
67.6
0.44
1.2
75
40
Major PPT
80
0.68
0.8
72.7
37.4
Minor 5ss
39.1
-1.2
2.8
40.8
45.4
Minor BPS
65.3
0.47
1.3
66.22
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024532
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044783
10949683 - 10953776
4094