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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10978335_10982773_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10978335 - 10982773
Intron Length:
4439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTCTTAA
5'SS Class:
weak_major
3'SS Sequence:
CTTTTTCCAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ACTTCCTTAACA
Flanking Amino Acid:
MEPTFQMVNDTAVLEF
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.3
65
37.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
69.8
0.45
1
72.4
31.3
Minor 5ss
47.5
-0.2
2.2
58.8
45.7
Minor BPS
86.6
1.15
1
85.87
33.2

Associated Gene:

Gene:
OR11L1
Ensembl Gene ID:
ENSAPLG00000002086
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002083
10977396 - 10982791
5396