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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1099459_1099924_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1099459 - 1099924
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCTATATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATCCCATTAACG
Flanking Amino Acid:
KKARGFFNYQASIFAENFGP
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.4
0.66
0.9
72.9
36.2
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
60.9
0.2
1.7
64.83
42.5

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591