About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1100053_1103288_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1100053 - 1103288
Intron Length:
3236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
ACTGCTTTATTT
Flanking Amino Acid:
AGANISGDLKDPQGAIPKGT
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
84.8
32.7
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
72.5
0.51
1.1
75.8
37.4
Minor 5ss
42.3
-0.8
3.1
59.9
38.7
Minor BPS
54.9
0.23
1.7
69.31
42.7

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591