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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11024240_11027382_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11024240 - 11027382
Intron Length:
3143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATGAAGT
Flanking Amino Acid:
RYNDIVDMQLTLGNDINVTL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
49.8
0.06
2
73.4
43.4

Associated Gene:

Gene:
SPPL2A
Ensembl Gene ID:
ENSAPLG00000014658
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015336
11018280 - 11043993
25714
ENSAPLT00000028252
11018280 - 11044036
25757