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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11033388_11034076_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11033388 - 11034076
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTTATATT
Flanking Amino Acid:
VVWAVFRNEDRWAWILQDIL
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.9
0.65
0.8
78.5
34
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
53.8
0.2
2
76.14
40.9

Associated Gene:

Gene:
SPPL2A
Ensembl Gene ID:
ENSAPLG00000014658
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028252
11018280 - 11044036
25757
ENSAPLT00000015336
11018280 - 11043993
25714