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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1103374_1105095_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1103374 - 1105095
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AAAATAATAATA
Flanking Amino Acid:
VAYIGVAICAASCVVRDATG
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
80
0.75
1
78.6
31
Major PPT
72
0.5
1
64.8
41.4
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
43.9
-0.4
1.7
50.96
33

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591