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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11039673_11043961_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11039673 - 11043961
Intron Length:
4289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTACAT
Flanking Amino Acid:
LDSTRTPLLQDDGTSGLPRK
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
75.6
29.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.3
0.68
0.8
79.5
33.1
Minor 5ss
42.2
-0.9
3
55.5
48.7
Minor BPS
64.8
0.54
1.7
84.29
36.6

Associated Gene:

Gene:
SPPL2A
Ensembl Gene ID:
ENSAPLG00000014658
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015336
11018280 - 11043993
25714