About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1105248_1106871_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1105248 - 1106871
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTAATG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
CDYGLMNNFQVMSMVSGFGP
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.2
62.1
42
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
39.6
-1.2
2.8
49.8
46
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591