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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11057113_11078419_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11057113 - 11078419
Intron Length:
21307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGTC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATTTTATAATA
Flanking Amino Acid:
MSQKSWIENTF
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
69.1
35.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
28.5
-2.5
3.6
37.5
41.8
Minor BPS
62.4
0.39
1.5
72.8
32.8

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707