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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1106980_1107762_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1106980 - 1107762
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTGTCTACCA
Flanking Amino Acid:
SLVSAPKVFQALCKDNVYKG
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75
0.56
1
67.5
43.1
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
46.4
-0.2
2.2
65.95
40.8

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591