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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1107887_1108798_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1107887 - 1108798
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
GTGTGTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ACCTAGGAAACT
Flanking Amino Acid:
FVIAMAFILIAELNTIAPII
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
73.6
36.5
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
76.5
0.6
1
69.6
41.6
Minor 5ss
41.9
-0.9
2.5
49.3
41.1
Minor BPS
36
-0.9
2.7
54.27
47.4

Associated Gene:

Gene:
SLC12A1
Ensembl Gene ID:
ENSAPLG00000007672
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008056
1085515 - 1134105
48591