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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11085444_11086287_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11085444 - 11086287
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTGTTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
LLECMKKKELITVFHIGSDE
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.6
0.58
1
73.3
40.9
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
TRPM7
Ensembl Gene ID:
ENSAPLG00000015254
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015958
11057110 - 11170816
113707